richysix / Crispr
CRISPR/Cas9 guide RNA Design
☆23Updated 11 months ago
Alternatives and similar repositories for Crispr:
Users that are interested in Crispr are comparing it to the libraries listed below
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Annotating principal splice isoforms☆14Updated 3 months ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 8 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- This BLENDER has been sunsetted☆16Updated 4 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- CRISPR NGS data analysis and visualization pipeline☆15Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 3 weeks ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆18Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Fast and accurate sequence demultiplexing☆27Updated 5 months ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆14Updated 7 years ago
- ☆37Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 6 months ago
- Population Reference Graphs for the HLA and MHC.☆34Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A software package for detection of copy number alterations from tumor samples☆12Updated 9 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated last year
- Efficient handling of FASTQ files from Python☆50Updated 4 months ago
- ☆24Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago