CRISPR/Cas9 guide RNA Design
☆24Feb 20, 2024Updated 2 years ago
Alternatives and similar repositories for Crispr
Users that are interested in Crispr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 4 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data☆140May 17, 2019Updated 6 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- CRISPR Cas9 ontarget prediction software☆32Mar 3, 2025Updated last year
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆25Jan 8, 2018Updated 8 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- A Boolean Algebra for Genetic Variants☆12Updated this week
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- All source code of the crispor.org website☆88Updated this week
- ☆26Oct 15, 2020Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 3 years ago
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Mar 6, 2017Updated 9 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- Numerical Encoding for Human Genetic Variants☆42Jun 8, 2023Updated 2 years ago
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 6 months ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- List of software/websites/databases/other stuff for genome engineering☆570Jun 20, 2024Updated last year
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- ☆49Nov 7, 2024Updated last year
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 4 months ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Sep 10, 2016Updated 9 years ago
- A project to extract CRISPR information from open genetic data.☆115Feb 5, 2020Updated 6 years ago