felicityallen / JACKSLinks
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
☆14Updated 4 years ago
Alternatives and similar repositories for JACKS
Users that are interested in JACKS are comparing it to the libraries listed below
Sorting:
- DRUGZ software☆24Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 3 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 9 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆39Updated this week
- Multi-Omics Peptide Generator☆28Updated 2 weeks ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- 3D hotspot mutation proximity analysis tool☆49Updated 2 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- PTa Analysis TOolkit☆13Updated 3 weeks ago
- ☆22Updated this week
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Python package to plot sequence logos☆29Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆86Updated last month
- Python package to analyze DNA methylation data☆44Updated 2 weeks ago
- ☆38Updated last year
- Absolute quantification package based on quantms.io☆16Updated last month
- Code for the CRISPOR article, all data and code to create figures and analysis☆45Updated 9 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last month
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago