felicityallen / JACKSLinks
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
☆15Updated 4 years ago
Alternatives and similar repositories for JACKS
Users that are interested in JACKS are comparing it to the libraries listed below
Sorting:
- DRUGZ software☆25Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 2 weeks ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆50Updated last week
- A software tool for personalized and allele-specific CRISPR editing.☆18Updated 3 years ago
- ☆17Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated this week
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- 3D hotspot mutation proximity analysis tool☆51Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- PTa Analysis TOolkit☆14Updated last month
- A Python package for gene network analysis☆32Updated 3 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 9 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Multi-Omics Peptide Generator☆30Updated 2 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Updated 4 months ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Generate robust DNA barcode sets☆33Updated last year