Alternatives and similar repositories for JACKS

Users that are interested in JACKS are comparing it to the libraries listed below

• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 4 years ago
• ToolsVanBox / PTATO
  PTa Analysis TOolkit
  ☆13Updated 2 weeks ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆38Updated 3 weeks ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 7 months ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆48Updated 2 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• patrickc01 / CRIS.py
  Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…
  ☆27Updated 2 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 6 years ago
• interactivereport / RNASequest
  ☆18Updated 2 weeks ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆46Updated 2 years ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆28Updated last year
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 3 years ago
• dlaperriere / GEO_microarrays
  analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…
  ☆11Updated 4 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• pinellolab / CRISPR-SURF
  ☆17Updated 11 months ago
• IEDB / PEPMatch
  ☆21Updated last week
• getzlab / CLUMPS-PTM
  CLUMPS adapted to post-translational modifications.
  ☆10Updated 3 months ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆31Updated last month
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆23Updated last week
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆15Updated 3 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆48Updated last month
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• JoachimGoedhart / VolcaNoseR
  Shiny app for making and annotating Volcano plots
  ☆24Updated last year