felicityallen / JACKSLinks
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
☆15Updated 4 years ago
Alternatives and similar repositories for JACKS
Users that are interested in JACKS are comparing it to the libraries listed below
Sorting:
- DRUGZ software☆25Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated 2 weeks ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- PTa Analysis TOolkit☆14Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- ☆17Updated last year
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 6 months ago
- 3D hotspot mutation proximity analysis tool☆50Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- ☆23Updated last month
- Multi-Omics Peptide Generator☆30Updated last month
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆49Updated this week
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Project Manager for NGS data analysis☆30Updated 3 weeks ago
- MHC Class I and Class II neoantigen binding prediction☆33Updated 5 months ago
- ☆38Updated 2 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- IPAW: a Nextflow workflow for proteogenomics☆29Updated last year
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural netw…☆25Updated 5 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago