sanger-cellular-informatics / CRISPR-AnalyserView external linksLinks
C++ package for analysing CRISPR off targets
☆21Apr 26, 2021Updated 4 years ago
Alternatives and similar repositories for CRISPR-Analyser
Users that are interested in CRISPR-Analyser are comparing it to the libraries listed below
Sorting:
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Aug 31, 2022Updated 3 years ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆25Jan 8, 2018Updated 8 years ago
- Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data☆138May 17, 2019Updated 6 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- ☆38Oct 25, 2018Updated 7 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆239Jul 8, 2020Updated 5 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆12Mar 31, 2021Updated 4 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Scripts for processing and predicting CRISPR/Cas9-generated mutations☆27Feb 25, 2023Updated 2 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- Draw genetic map (linkage map) in R☆13Nov 12, 2017Updated 8 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- All source code of the crispor.org website☆87Updated this week
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 5 years ago
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- Amplicon Sequencing Analysis Pipeline☆18Sep 12, 2025Updated 5 months ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- A local tool for high-throughput CRISPR single-guide RNA (sgRNA) design in plants.☆17Oct 14, 2024Updated last year
- Minor Variant Calling and Phasing Tools☆15Jan 13, 2022Updated 4 years ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21May 8, 2017Updated 8 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- ☆23Jan 11, 2019Updated 7 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- BEER: Batch EffEct Remover for single-cell data☆24Jan 9, 2025Updated last year
- python access to UCSC genomes database☆136Aug 27, 2020Updated 5 years ago