sanger-cellular-informatics / CRISPR-AnalyserLinks
C++ package for analysing CRISPR off targets
☆21Updated 4 years ago
Alternatives and similar repositories for CRISPR-Analyser
Users that are interested in CRISPR-Analyser are comparing it to the libraries listed below
Sorting:
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- Tools for bam file processing☆55Updated 10 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- Useful tools for working with Salmon output☆39Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆36Updated last month
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Updated 8 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year