Alternatives and similar repositories for Azimuth

Users that are interested in Azimuth are comparing it to the libraries listed below

• lucapinello / CRISPResso
  Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
  ☆136Updated 6 years ago
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆266Updated 5 years ago
• kundajelab / dragonn
  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
  ☆262Updated 2 years ago
• kipoi / models
  Model zoo for genomics
  ☆168Updated last year
• microsoft / Elevation
  End-to-end guide design for CRISPR/Cas9 with machine learning
  ☆134Updated 2 years ago
• cangermueller / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆148Updated 5 years ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 3 years ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆158Updated 8 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆238Updated last year
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 9 years ago
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆315Updated last week
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆298Updated last year
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆385Updated 9 months ago
• pnpnpn / dna2vec
  dna2vec: Consistent vector representations of variable-length k-mers
  ☆189Updated 3 years ago
• bm2-lab / DeepCRISPR
  ☆66Updated 2 years ago
• uci-cbcl / D-GEX
  Deep learning for gene expression inference
  ☆145Updated 6 years ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆123Updated 2 years ago
• OpenGene / awesome-bio-datasets
  awesome-bio-datasets
  ☆234Updated 7 years ago
• davidliwei / awesome-CRISPR
  List of software/websites/databases/other stuff for genome engineering
  ☆545Updated last year
• vanessajurtz / lasagne4bio
  ☆107Updated 7 years ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆397Updated last month
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆303Updated 10 months ago
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆450Updated 4 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 4 months ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆44Updated 9 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆215Updated 3 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆115Updated 4 years ago
• calipho-sib / feature-viewer
  Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
  ☆117Updated last year