boutroslab / CRISPRAnalyzeRLinks
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
☆81Updated 5 years ago
Alternatives and similar repositories for CRISPRAnalyzeR
Users that are interested in CRISPRAnalyzeR are comparing it to the libraries listed below
Sorting:
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆49Updated 3 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆67Updated 3 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 6 months ago
- ☆117Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Transcript quantification import for modular pipelines☆141Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 6 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Updated 3 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆83Updated last week
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago