MerrimanLab / selectionTools
Pipeline to take VCF through to Selection Analysis.
☆58Updated 2 years ago
Alternatives and similar repositories for selectionTools:
Users that are interested in selectionTools are comparing it to the libraries listed below
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- ☆30Updated 3 weeks ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- ☆43Updated 2 weeks ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- ☆78Updated 11 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- ☆20Updated 4 years ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆33Updated 10 months ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆57Updated 6 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last week
- Estimate recombination rates from population genetic data☆65Updated 4 years ago