Pipeline to take VCF through to Selection Analysis.
☆58Dec 11, 2022Updated 3 years ago
Alternatives and similar repositories for selectionTools
Users that are interested in selectionTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype based scans for selection☆147Apr 30, 2026Updated 2 weeks ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- ☆15Apr 16, 2026Updated last month
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49May 6, 2026Updated last week
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 5 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 11 months ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆21May 10, 2023Updated 3 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tutorial on using popular tools for learning about population history☆54Jul 18, 2018Updated 7 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- ☆14Mar 7, 2021Updated 5 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 7 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 3 months ago
- ☆19Sep 20, 2021Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆121Aug 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Nov 6, 2020Updated 5 years ago
- Added functions for Echidna in R☆11Apr 14, 2023Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- DPPDIV☆12Apr 10, 2020Updated 6 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆72Oct 16, 2023Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago