ElanaPearl / InterPLM
Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
☆164Updated 2 months ago
Alternatives and similar repositories for InterPLM:
Users that are interested in InterPLM are comparing it to the libraries listed below
- ☆148Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆250Updated 8 months ago
- Protein language model customized for antibodies☆129Updated last week
- ☆99Updated last month
- ProtMamba: a homology-aware but alignment-free protein state space model☆57Updated this week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆128Updated last month
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆150Updated last year
- gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)☆187Updated 3 weeks ago
- ☆57Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆136Updated 3 weeks ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆231Updated 2 weeks ago
- A Modular Architecture for Deep Learning Systems☆40Updated last week
- Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners☆138Updated 3 weeks ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆72Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆114Updated 3 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- Minimal AlphaFold☆54Updated 7 months ago
- List of computational protein design research labs☆165Updated last month
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 3 years ago
- ☆102Updated 10 months ago
- ML-guided enzyme engineering☆58Updated 3 weeks ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆71Updated 2 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆426Updated 2 months ago
- Aligning protein generative models with experimental fitness☆88Updated 5 months ago
- ☆93Updated 4 months ago
- A short course on proteins and protein design aimed at early career students☆153Updated 8 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆178Updated 11 months ago