☆114Jun 9, 2026Updated this week
Alternatives and similar repositories for wf-transcriptomes
Users that are interested in wf-transcriptomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cDNA read preprocessing☆93Jul 25, 2024Updated last year
- ☆52Apr 10, 2026Updated 2 months ago
- ☆18Apr 18, 2024Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆229Updated this week
- ☆21Nov 24, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆37Mar 17, 2026Updated 2 months ago
- ☆34Mar 9, 2026Updated 3 months ago
- ☆111Jan 23, 2026Updated 4 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆246May 20, 2026Updated 3 weeks ago
- Oxford Nanopore's Basecaller☆837May 20, 2026Updated 3 weeks ago
- ☆65Mar 19, 2026Updated 2 months ago
- ☆13May 2, 2025Updated last year
- ☆169Jan 22, 2026Updated 4 months ago
- ☆50Nov 24, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- long read RNA-seq quantification☆112Jun 7, 2026Updated last week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Feb 7, 2023Updated 3 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆91May 11, 2026Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆227Apr 30, 2026Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- ☆21Apr 20, 2026Updated last month
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- ☆49Jan 23, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆254Jun 2, 2026Updated last week
- Full-Length Alternative Isoform analysis of RNA☆253May 19, 2026Updated 3 weeks ago
- A curated list of awesome nanopore analysis tools.☆313May 20, 2026Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆40Mar 25, 2025Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆54Updated this week
- SUPPA: Fast quantification of splicing and differential splicing