epi2me-labs / wf-transcriptomesLinks
☆109Updated last month
Alternatives and similar repositories for wf-transcriptomes
Users that are interested in wf-transcriptomes are comparing it to the libraries listed below
Sorting:
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated 2 years ago
- Tools for plotting methylation data in various ways☆166Updated last month
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆146Updated 4 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆166Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- ☆145Updated last month
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 5 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆154Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆197Updated last week
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 5 months ago
- A tool for somatic structural variant calling using long reads☆158Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- Whole Genome Alignment Tools☆212Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- Jasmine: SV Merging Across Samples☆233Updated last year
- accurate LiftOver tool for new genome assemblies☆145Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated 2 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆167Updated 9 months ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆219Updated this week
- Detection of m6A from direct RNA-Seq data☆129Updated 7 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago