☆116Aug 5, 2026Updated last month
Alternatives and similar repositories for wf-transcriptomes
Users that are interested in wf-transcriptomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Apr 10, 2026Updated 5 months ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- ☆18Apr 18, 2024Updated 2 years ago
- A universal toolkit for upstream processing of long RNA reads☆239Updated this week
- ☆34Mar 9, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆22Nov 24, 2025Updated 10 months ago
- ☆38Aug 6, 2026Updated last month
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 8 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆259Sep 2, 2026Updated 3 weeks ago
- Oxford Nanopore's Basecaller☆875Sep 3, 2026Updated 3 weeks ago
- ☆68Mar 19, 2026Updated 6 months ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆43Jun 8, 2026Updated 3 months ago
- ☆14May 2, 2025Updated last year
- ☆54Nov 24, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- long read RNA-seq quantification☆124Aug 19, 2026Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Sep 11, 2026Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆230Sep 11, 2026Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆59Oct 14, 2024Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- ☆21Apr 20, 2026Updated 5 months ago
- Full-Length Alternative Isoform analysis of RNA☆257Sep 8, 2026Updated 2 weeks ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆262Sep 13, 2026Updated last week
- A curated list of awesome nanopore analysis tools.☆330May 20, 2026Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- ☆51Jan 23, 2026Updated 8 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆308Nov 6, 2025Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆136Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- ☆179Jul 20, 2026Updated 2 months ago
- ☆24Feb 26, 2026Updated 6 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆27Oct 2, 2025Updated 11 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆281Sep 17, 2026Updated last week