Alternatives and similar repositories for scRNAtoolVis

Users that are interested in scRNAtoolVis are comparing it to the libraries listed below

• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆556Updated last year
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆293Updated 2 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆321Updated this week
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆185Updated last week
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆254Updated 2 weeks ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆493Updated 5 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆311Updated 6 years ago
• navinlabcode / copykat
  ☆251Updated last year
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆214Updated 6 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆456Updated 2 weeks ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆303Updated 5 years ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆344Updated 9 months ago
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆466Updated last year
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆439Updated last year
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆291Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆275Updated 10 months ago
• cole-trapnell-lab / monocle3
  ☆404Updated 2 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆431Updated 6 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆272Updated this week
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆433Updated last week
• Teichlab / cellphonedb
  ☆358Updated 3 years ago
• sunduanchen / Scissor
  Scissor package
  ☆236Updated last year
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆168Updated this week
• jmzeng1314 / scRNA_10X
  ☆94Updated 6 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆635Updated 7 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆345Updated this week
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆150Updated 4 years ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆421Updated 3 weeks ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆566Updated last month