Phylogenetics between and within hosts at once, all along the genome.
☆51Oct 2, 2024Updated last year
Alternatives and similar repositories for phyloscanner
Users that are interested in phyloscanner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jul 5, 2026Updated last month
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated last month
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 7 years ago
- TN93 fast distance calculator☆21May 10, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Jul 6, 2026Updated last month
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- A Python library for interacting with ENA's API☆25Aug 10, 2021Updated 5 years ago
- ☆38Jan 12, 2026Updated 7 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 2 weeks ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 8 months ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆32Sep 21, 2023Updated 2 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Updated this week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Bayesian Evolutionary Analysis Sampling Trees☆248Updated this week
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Aug 21, 2023Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆41Apr 6, 2026Updated 4 months ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- HyPhy: Hypothesis testing using Phylogenies☆269Jul 23, 2026Updated 3 weeks ago
- An R htmlwidgets package of phylotree.js☆18Feb 26, 2015Updated 11 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- Sequence simulator☆55Feb 3, 2025Updated last year
- FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2☆15Aug 12, 2025Updated last year