roblanf / BenchmarkAlignmentsLinks
Benchmark empirical datasets for phylogenetic method development
☆19Updated last year
Alternatives and similar repositories for BenchmarkAlignments
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below
Sorting:
- ☆18Updated last week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated this week
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆36Updated 4 months ago
- ☆19Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- ☆12Updated 6 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 months ago
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- ☆17Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆51Updated this week
- Read contamination removal☆25Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆23Updated 3 weeks ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆31Updated 3 weeks ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆49Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- ☆30Updated 2 years ago