Benchmark empirical datasets for phylogenetic method development
☆19Dec 5, 2023Updated 2 years ago
Alternatives and similar repositories for BenchmarkAlignments
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆20Apr 16, 2026Updated 2 weeks ago
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- ☆20Jun 15, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆11Mar 19, 2026Updated last month
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- Efficient phylogenomic software by maximum likelihood☆209Nov 4, 2021Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- ☆19Mar 20, 2026Updated last month
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 6 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Visualization of COVID-19 spread metrics.☆11Apr 15, 2022Updated 4 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆38Apr 17, 2026Updated 2 weeks ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated 8 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆19Jan 21, 2026Updated 3 months ago
- ☆12Sep 2, 2020Updated 5 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.☆20Feb 23, 2026Updated 2 months ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- ☆12Feb 9, 2025Updated last year
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Apr 24, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 11 months ago
- Handle Strings as Vectors of Characters☆27Nov 7, 2024Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- ☆28May 22, 2020Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago