Benchmark empirical datasets for phylogenetic method development
☆20Dec 5, 2023Updated 2 years ago
Alternatives and similar repositories for BenchmarkAlignments
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated 2 years ago
- Generate phylogenetic datasets with minimal setup effort☆16Jun 2, 2026Updated 2 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- Estimating time trees from very large phylogenies☆27Jul 21, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Workflow for qiime2 workshop☆17Apr 17, 2024Updated 2 years ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated 2 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 7 years ago
- ☆23Jul 5, 2026Updated last month
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆21Aug 11, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 3 years ago
- Visualization of COVID-19 spread metrics.☆11Apr 15, 2022Updated 4 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆18Jan 21, 2026Updated 7 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- ☆12Sep 2, 2020Updated 5 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆255Updated this week
- ☆13Jul 20, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Apr 17, 2026Updated 4 months ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 3 months ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago