roblanf / BenchmarkAlignmentsLinks
Benchmark empirical datasets for phylogenetic method development
☆19Updated last year
Alternatives and similar repositories for BenchmarkAlignments
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below
Sorting:
- ☆18Updated last month
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆50Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 3 months ago
- HyPhy tutorials☆11Updated 7 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Influenza genome analysis Nextflow workflow☆22Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last week
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆21Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆17Updated last year
- ☆19Updated last year
- Python Toolkit for using containerized programs in either Singularity or Docker☆28Updated last year
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 9 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated 11 months ago
- ☆12Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Read contamination removal☆25Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago