Benchmark empirical datasets for phylogenetic method development
☆20Dec 5, 2023Updated 2 years ago
Alternatives and similar repositories for BenchmarkAlignments
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate phylogenetic datasets with minimal setup effort☆16Jun 2, 2026Updated 3 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- ☆20Jun 15, 2024Updated 2 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆12Jun 3, 2026Updated 3 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Jul 25, 2019Updated 7 years ago
- ☆23Jul 5, 2026Updated 2 months ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- phylo2vec: a library for vector-based phylogenetic tree manipulation☆21Sep 1, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 4 years ago
- Visualization of COVID-19 spread metrics.☆11Apr 15, 2022Updated 4 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆18Jan 21, 2026Updated 7 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation☆21Dec 4, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Sep 2, 2020Updated 6 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 4 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Pretrained spoken language classifiers from audio.☆10Jan 21, 2021Updated 5 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆255Updated this week
- ☆13Jul 20, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆42Apr 17, 2026Updated 5 months ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Sep 27, 2017Updated 8 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆23Jul 24, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 4 months ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago