roblanf / BenchmarkAlignments
Benchmark empirical datasets for phylogenetic method development
☆18Updated last year
Alternatives and similar repositories for BenchmarkAlignments:
Users that are interested in BenchmarkAlignments are comparing it to the libraries listed below
- ☆17Updated last month
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 10 months ago
- HyPhy tutorials☆11Updated 6 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆33Updated last week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 8 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- ☆52Updated 3 years ago
- ☆12Updated 5 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆17Updated 9 months ago
- R We There Yet?☆30Updated this week
- ☆19Updated 9 months ago
- Gene-flank analysis tool☆27Updated 3 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆63Updated 4 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆42Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- A set of scripts for calculating pairwise SNP distance☆39Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆61Updated 2 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆31Updated 2 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago