☆23Aug 5, 2026Updated 2 months ago
Alternatives and similar repositories for hivtrace
Users that are interested in hivtrace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TN93 fast distance calculator☆21Oct 9, 2026Updated 3 weeks ago
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago
- ☆23Oct 9, 2026Updated 3 weeks ago
- ☆13Jul 20, 2026Updated 3 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HIVDB Genotypic Resistance Interpretation Program☆23Sep 27, 2026Updated last month
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Updated this week
- HIVdb webservice client☆13Jan 22, 2026Updated 9 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆51Oct 2, 2024Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data☆12Mar 2, 2025Updated last year
- ☆13Oct 26, 2026Updated last week
- Source files for online resources of Bioinformatics of Infectious Diseases course☆23May 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- ☆11May 10, 2025Updated last year
- ☆17Nov 19, 2021Updated 4 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- R package for network models of HIV and STI transmission: the engine version used in each published paper, by release tag☆25Oct 19, 2026Updated 2 weeks ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆22Nov 6, 2023Updated 2 years ago
- Molecular Epidemiology of Viruses in R☆20Sep 24, 2015Updated 11 years ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 10 months ago
- Curso de Genómica Computacional impartido en la Facultad de Ciencias, UNAM.☆13Nov 13, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Cluster Investigation & Virus Epidemiology Tool☆51Jul 6, 2026Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 4 months ago
- HyPhy 2.5.x (Maintenance Mode — bug fixes only). All active development has moved to HyPhy 3: https://github.com/veg/hyphy-3☆275Oct 13, 2026Updated 3 weeks ago
- Community website project.☆15Jan 11, 2023Updated 3 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- ☆14Apr 28, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- a better seqLogo☆12Feb 16, 2018Updated 8 years ago
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆21Updated this week
- Network interviews in the web browser!☆14Updated this week
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆15Oct 6, 2023Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Sequences from HIV Easily Reconstructed☆29May 3, 2024Updated 2 years ago