gtonkinhill / fastbapsLinks
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
☆65Updated 2 years ago
Alternatives and similar repositories for fastbaps
Users that are interested in fastbaps are comparing it to the libraries listed below
Sorting:
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Bacterial GWAS analysis☆43Updated last month
- Recombination-free trees☆59Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- Bifrost graph gene caller.☆96Updated 11 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- whole genome MLST analysis☆46Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 7 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- Discover and annotate the virome☆46Updated last month
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 3 weeks ago