Library of sketching functions used by PopPUNK
☆29Jun 8, 2026Updated 4 months ago
Alternatives and similar repositories for pp-sketchlib
Users that are interested in pp-sketchlib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Oct 19, 2026Updated last week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆114Oct 12, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- Fast sequence distance estimates☆35Updated this week
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 3 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 4 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆157Jun 10, 2026Updated 4 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Oct 24, 2026Updated last week
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 6 months ago
- ☆23Oct 9, 2026Updated 3 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 3 months ago
- Gene-flank analysis tool☆37Dec 18, 2024Updated last year
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data☆11Jun 1, 2026Updated 5 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated 4 months ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated 2 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Just another minhash implementation.☆13Oct 23, 2026Updated last week
- ☆16Jan 21, 2024Updated 2 years ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 9 months ago
- ☆44Nov 20, 2021Updated 4 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆121Dec 13, 2024Updated last year
- modular k-mer count matrix and Bloom filter construction for large read collections☆90Sep 18, 2026Updated last month