HurlesGroupSanger / DeNovoWESTLinks
☆23Updated 2 months ago
Alternatives and similar repositories for DeNovoWEST
Users that are interested in DeNovoWEST are comparing it to the libraries listed below
Sorting:
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- ☆23Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆18Updated 5 years ago