ekg / bamaddrgLinks
adds sample names and read-group (RG) tags to BAM alignments
☆51Updated 5 years ago
Alternatives and similar repositories for bamaddrg
Users that are interested in bamaddrg are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Structural Variant Index☆75Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Detect novel (and reference) STR expansions from short-read data☆70Updated last month
- Python package and routines for merging VCF files☆29Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- ☆83Updated 10 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Specifications for PacBio® native file formats☆31Updated last year