ekg / bamaddrgLinks
adds sample names and read-group (RG) tags to BAM alignments
☆51Updated 4 years ago
Alternatives and similar repositories for bamaddrg
Users that are interested in bamaddrg are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Structural Variant Index☆75Updated 8 months ago
- 10x Genomics Reads Simulator☆45Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- ☆81Updated 5 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Specifications for PacBio® native file formats☆31Updated 9 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Structural variant caller☆55Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 10 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year