ad3002 / CookiecutterLinks
☆16Updated 9 years ago
Alternatives and similar repositories for Cookiecutter
Users that are interested in Cookiecutter are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆63Updated 2 weeks ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated 11 months ago
- TGS scaffolding☆46Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆26Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago