☆16Jul 16, 2016Updated 10 years ago
Alternatives and similar repositories for Cookiecutter
Users that are interested in Cookiecutter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipelines for the production of Treeval data☆31Updated this week
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Reference-free profiling of polyploid genomes☆149Oct 2, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Fast and frugal disk based k-mer counter☆15Apr 1, 2021Updated 5 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Jan 14, 2026Updated 9 months ago
- ☆29Jul 18, 2026Updated 3 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- k-mer learning materials☆88Feb 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 3 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 8 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Jun 18, 2026Updated 4 months ago
- Fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, comparison): 16 million viral contigs analyzed in less…☆102Sep 10, 2026Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- A multiple alignment analyser