ad3002 / Cookiecutter
☆16Updated 8 years ago
Alternatives and similar repositories for Cookiecutter:
Users that are interested in Cookiecutter are comparing it to the libraries listed below
- Population-wide Deletion Calling☆35Updated last week
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆28Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- ☆79Updated last month
- Structural variant caller☆54Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆30Updated 8 months ago
- ☆34Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- ☆21Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ☆76Updated 4 years ago
- ☆34Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 3 weeks ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago