samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
☆240Aug 11, 2021Updated 4 years ago
Alternatives and similar repositories for samblaster
Users that are interested in samblaster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated last month
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆509Feb 26, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆840Apr 1, 2026Updated last week
- BAM Statistics, Feature Counting and Annotation☆154Updated this week
- ☆97Sep 21, 2022Updated 3 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated 3 weeks ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆106Oct 29, 2022Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Jan 7, 2020Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆864Feb 8, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Strelka2 germline and somatic small variant caller☆392Dec 29, 2021Updated 4 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 5 years ago
- BEDOPS: high-performance genomic feature operations☆365Apr 29, 2025Updated 11 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆176Aug 22, 2024Updated last year
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Structural variation caller using third generation sequencing☆645Apr 2, 2026Updated last week
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆116Mar 13, 2026Updated 3 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Dec 14, 2020Updated 5 years ago
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 9 months ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- C++ API & command-line toolkit for working with BAM data☆429May 18, 2025Updated 10 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Copy number variant detection from targeted DNA sequencing☆606Updated this week
- An efficient FASTQ manipulation suite☆139Jan 27, 2020Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Structural variant and indel caller for mapped sequencing data☆461Oct 11, 2025Updated 5 months ago