GregoryFaust / samblasterLinks
samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.
☆233Updated 3 years ago
Alternatives and similar repositories for samblaster
Users that are interested in samblaster are comparing it to the libraries listed below
Sorting:
- VarDict☆200Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆222Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆188Updated this week
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆168Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆97Updated 6 months ago
- NEAT read simulation tools☆98Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- ☆94Updated 3 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago