Illumina / Isaac3View external linksLinks
Aligner for sequencing data
☆18Feb 13, 2018Updated 8 years ago
Alternatives and similar repositories for Isaac3
Users that are interested in Isaac3 are comparing it to the libraries listed below
Sorting:
- Aligner for sequencing data☆21Apr 12, 2016Updated 9 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Isaac aligner version 4☆19Feb 3, 2022Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 5 months ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated last week
- HGVS variant description extractor☆11Sep 14, 2020Updated 5 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆28Oct 7, 2025Updated 4 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 weeks ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Collection of notes and scripts related to NGS☆14Dec 31, 2025Updated last month
- Thousand Variant Callers Project Repository☆73Oct 17, 2019Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Jan 7, 2026Updated last month
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- ☆16Jun 2, 2024Updated last year
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Beacon of Beacons.☆14Sep 25, 2018Updated 7 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- Easy genomic regions for short-read variant calling☆45Sep 10, 2025Updated 5 months ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- The Dazzler Data Base☆36Feb 17, 2025Updated 11 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago