lgautier / fastq-and-furiousView external linksLinks
Efficient handling of FASTQ files from Python
☆51Nov 28, 2025Updated 2 months ago
Alternatives and similar repositories for fastq-and-furious
Users that are interested in fastq-and-furious are comparing it to the libraries listed below
Sorting:
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Dec 14, 2024Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 5 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 6 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Fast multi-line FASTA/Q reader in several programming languages☆177Jun 6, 2021Updated 4 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 9 months ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Oct 8, 2025Updated 4 months ago
- ☆15Mar 7, 2016Updated 9 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 9 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Oct 7, 2024Updated last year
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 10 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 2 weeks ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago