lh3 / tabtkLinks
Toolkit for processing TAB-delimited format
☆62Updated last year
Alternatives and similar repositories for tabtk
Users that are interested in tabtk are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- My bioinfo toolbox☆50Updated 11 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆78Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago