vcflib / bio-vcf
Smart VCF parser DSL
☆82Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for bio-vcf
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- VCF-kit: Assorted utilities for the variant call format☆123Updated 3 months ago
- Assembly Based ReAligner☆72Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- An awk-like VCF parser☆55Updated 10 months ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆95Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- ☆78Updated 10 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- create a gemini-compatible database from a VCF☆56Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆107Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆69Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- BigWig and BAM utilities☆92Updated 7 months ago
- Tools for querying and analysis of genomic data☆27Updated 3 weeks ago
- ☆81Updated 5 years ago
- A C library for handling bigWig files☆74Updated 2 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago