vcflib / bio-vcfLinks
Smart VCF parser DSL
☆83Updated 3 years ago
Alternatives and similar repositories for bio-vcf
Users that are interested in bio-vcf are comparing it to the libraries listed below
Sorting:
- A read extraction and realignment tool for next generation sequencing data☆100Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- BigWig and BAM utilities☆96Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- ☆78Updated 11 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆95Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Tools for querying and analysis of genomic data☆27Updated 7 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆48Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆87Updated 8 months ago
- Fast fusion detection using kallisto☆80Updated last month
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- ☆54Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆80Updated 2 weeks ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago