vcflib / bio-vcfLinks
Smart VCF parser DSL
☆83Updated 3 years ago
Alternatives and similar repositories for bio-vcf
Users that are interested in bio-vcf are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆78Updated 11 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆96Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Toolkit for processing TAB-delimited format☆62Updated last year
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- ☆63Updated 5 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- BigWig and BAM utilities☆99Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- Ancestry and Kinship Tools☆70Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- R package designed to simplify structural variant analysis☆74Updated 3 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 6 months ago