vcflib / bio-vcfLinks
Smart VCF parser DSL
☆83Updated 3 years ago
Alternatives and similar repositories for bio-vcf
Users that are interested in bio-vcf are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆78Updated 11 years ago
- ☆96Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- ☆55Updated 5 years ago
- BigWig and BAM utilities☆102Updated last year
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 4 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- A C library for handling bigWig files☆81Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago