ekg / fastahackLinks
utilities for indexing and sequence extraction from FASTA files
☆59Updated 4 years ago
Alternatives and similar repositories for fastahack
Users that are interested in fastahack are comparing it to the libraries listed below
Sorting:
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆54Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Genome inference from a population reference graph☆97Updated 4 months ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 6 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Structural Variant Index☆75Updated 7 months ago