ekg / fastahackLinks
utilities for indexing and sequence extraction from FASTA files
☆59Updated 4 years ago
Alternatives and similar repositories for fastahack
Users that are interested in fastahack are comparing it to the libraries listed below
Sorting:
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Genome inference from a population reference graph☆96Updated 8 months ago
- 10x Genomics Reads Simulator☆46Updated last year
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- ☆46Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Maximum likelihood demultiplexing☆50Updated 9 months ago
- ☆49Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Structural variant detection and association testing☆109Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆53Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago