Platypus Variant Caller
☆107Jun 27, 2024Updated last year
Alternatives and similar repositories for Platypus
Users that are interested in Platypus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- adds sample names and read-group (RG) tags to BAM alignments☆51Dec 14, 2020Updated 5 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- ☆29Feb 17, 2021Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Apr 20, 2026Updated 2 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Oct 18, 2024Updated last year
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆113Oct 16, 2025Updated 6 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆514Feb 26, 2026Updated 2 months ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 7 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆676Mar 20, 2026Updated last month
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Apr 27, 2026Updated last week
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- simple viewer for variant call format using htslib☆33Jan 17, 2017Updated 9 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- ☆25May 21, 2021Updated 4 years ago
- Structural variation and indel detection by local assembly☆255Apr 30, 2026Updated last week
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- ☆94Jan 11, 2022Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 8 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago