tommyau / bamclipperLinks
Remove primer sequence from BAM alignments by soft-clipping
☆31Updated 6 years ago
Alternatives and similar repositories for bamclipper
Users that are interested in bamclipper are comparing it to the libraries listed below
Sorting:
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- ☆51Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 6 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- ☆46Updated 6 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago