tommyau / bamclipper
Remove primer sequence from BAM alignments by soft-clipping
☆31Updated 5 years ago
Alternatives and similar repositories for bamclipper:
Users that are interested in bamclipper are comparing it to the libraries listed below
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago