tommyau / bamclipper
Remove primer sequence from BAM alignments by soft-clipping
☆31Updated 5 years ago
Alternatives and similar repositories for bamclipper:
Users that are interested in bamclipper are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆39Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- SV detection from paired end reads mapping☆38Updated 14 years ago
- ☆79Updated 3 weeks ago
- Maximum likelihood demultiplexing☆46Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- An awk-like VCF parser☆56Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago