ryanlayer / svvLinks
Stupid Simple Structural Variant View
☆25Updated 8 years ago
Alternatives and similar repositories for svv
Users that are interested in svv are comparing it to the libraries listed below
Sorting:
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- sort genomic data☆35Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- ☆37Updated 4 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Nanopore desc☆18Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Hemang Parikh☆11Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago