gt1 / libmaus2Links
collection of data structures and algorithms
☆19Updated 6 years ago
Alternatives and similar repositories for libmaus2
Users that are interested in libmaus2 are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- ☆28Updated last month
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- ☆37Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Population-wide Deletion Calling☆35Updated last month
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago