gt1 / libmaus2Links
collection of data structures and algorithms
☆19Updated 6 years ago
Alternatives and similar repositories for libmaus2
Users that are interested in libmaus2 are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- ☆37Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- a string to graph aligner☆41Updated 9 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 months ago
- 10x Genomics Reads Simulator☆45Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- reference free variant assembly☆33Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆28Updated 4 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago