mdshw5 / fastqpLinks
Simple FASTQ quality assessment using Python
☆109Updated 4 years ago
Alternatives and similar repositories for fastqp
Users that are interested in fastqp are comparing it to the libraries listed below
Sorting:
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 3 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last week
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 2 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 7 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 8 months ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- Platypus Variant Caller☆108Updated last year
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ☆82Updated 3 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆183Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 weeks ago
- ☆123Updated last week
- Read visualizer for structural variants☆84Updated 6 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated last month
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- Practical, reusable scripts for bioinformatics☆101Updated 6 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆118Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- ABRA2☆92Updated 2 years ago