mdshw5 / fastqp
Simple FASTQ quality assessment using Python
☆108Updated 3 years ago
Alternatives and similar repositories for fastqp:
Users that are interested in fastqp are comparing it to the libraries listed below
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆121Updated last week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated this week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆143Updated 8 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆54Updated 9 years ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆158Updated 2 years ago
- ☆120Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 6 years ago
- Issue tracker for the Biostar Handbook☆62Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated last week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆142Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Platypus Variant Caller☆108Updated 10 months ago
- VCF-kit: Assorted utilities for the variant call format☆129Updated this week
- VarDict☆198Updated last year