Simple FASTQ quality assessment using Python
☆109Feb 24, 2026Updated 3 months ago
Alternatives and similar repositories for fastqp
Users that are interested in fastqp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient pythonic random access to fasta subsequences☆486Mar 19, 2026Updated 2 months ago
- Python3 scripts to manipulate FASTA and FASTQ files☆73Mar 24, 2025Updated last year
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- k-mer similarity analysis pipeline☆22Apr 30, 2026Updated last month
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- C++ API & command-line toolkit for working with BAM data☆430May 18, 2025Updated last year
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last month
- ☆12Jan 21, 2016Updated 10 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 2 weeks ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated 2 months ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆112Mar 11, 2026Updated 2 months ago
- A read extraction and realignment tool for next generation sequencing data☆108Oct 29, 2022Updated 3 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 weeks ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- ☆126Aug 1, 2025Updated 10 months ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 6 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated last month
- FASTA/FASTQ pre-processing programs☆202Mar 4, 2022Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆241Aug 11, 2021Updated 4 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- Public Health England SNP calling pipeline.☆37Sep 4, 2018Updated 7 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 6 months ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159May 2, 2026Updated last month
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- adds sample names and read-group (RG) tags to BAM alignments☆51Dec 14, 2020Updated 5 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- A fast multi-threaded k-mer counter☆542Mar 20, 2024Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 6 months ago