DKFZ-ODCF / DKFZBiasFilterLinks
☆12Updated 3 years ago
Alternatives and similar repositories for DKFZBiasFilter
Users that are interested in DKFZBiasFilter are comparing it to the libraries listed below
Sorting:
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
 - picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
 - An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 7 years ago
 - Haplotype-based somatic genome simulator☆10Updated 8 years ago
 - 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
 - Predicting oncogenic potential of gene fusions☆12Updated 9 years ago
 - CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
 - SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
 - ☆29Updated 4 years ago
 - Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
 - Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
 - A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
 - Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
 - ☆16Updated 2 years ago
 - An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Updated 2 years ago
 - Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
 - BigWig manpulation tools using libBigWig and htslib☆29Updated last year
 - create a gemini-compatible database from a VCF☆56Updated 4 years ago
 - A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
 - ☆13Updated 8 years ago
 - R tools to interact with hap.py output☆16Updated 6 years ago
 - Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
 - ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
 - Prioritize structural variants based on CADD scores☆29Updated 5 years ago
 - Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
 - PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
 - Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
 - ☆20Updated 8 years ago
 - RNA Fusion Detection and Quantification☆18Updated 7 years ago
 - Simple matching of HTS samples based on HLA typing☆13Updated 8 years ago