yinxc / structural-information-minimisationLinks
Code of structural entropy minimisation for TAD identification of Hic matrix
☆13Updated 5 years ago
Alternatives and similar repositories for structural-information-minimisation
Users that are interested in structural-information-minimisation are comparing it to the libraries listed below
Sorting:
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 2 years ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- ☆66Updated 3 weeks ago
- ☆31Updated 5 years ago
- A GAN-based method for Enhancing Hi-C data☆33Updated 4 years ago
- ☆48Updated 6 years ago
- ☆16Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Updated 2 years ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆50Updated last year
- Genome-wide contact analysis using sklearn☆68Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆48Updated 6 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 8 months ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆83Updated 3 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆68Updated 7 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- Toolkit for single-cell DNA methylation analysis.☆41Updated this week
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆9Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- ☆27Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Discovery of communities in Pore-C concatemers☆12Updated 4 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆79Updated 8 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- icSHAPE pipeline☆30Updated 9 years ago