Code of structural entropy minimisation for TAD identification of Hic matrix
☆13Sep 15, 2019Updated 6 years ago
Alternatives and similar repositories for structural-information-minimisation
Users that are interested in structural-information-minimisation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 3 months ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- ☆18Oct 4, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- code associated with crane-nature-2015, 10.1038/nature14450☆38Aug 28, 2015Updated 10 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Sep 26, 2024Updated last year
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- Gene expression deconvolution using dampened weighted least squares☆37Feb 4, 2021Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- CDSeq MATLAB code. CDSeq is a novel computational complete deconvolution method for dissecting tissue heterogeneity.☆11Oct 10, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Dec 21, 2021Updated 4 years ago
- ☆13Jul 21, 2021Updated 5 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- ☆19Nov 9, 2020Updated 5 years ago
- an efficient Hi-C data processing pipeline☆19Mar 26, 2024Updated 2 years ago
- Reading list for multimodal learning in healthcare☆11Oct 9, 2023Updated 2 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)☆10Aug 14, 2018Updated 7 years ago
- ☆19May 5, 2020Updated 6 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Jan 9, 2017Updated 9 years ago
- ☆26Jan 27, 2023Updated 3 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- Wormbase Build Pipeline☆22Jan 7, 2026Updated 7 months ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Feb 18, 2022Updated 4 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Feb 14, 2019Updated 7 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- ☆18Sep 1, 2022Updated 3 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated 2 years ago
- Subspace Clustering by Block Diagonal Representation☆14May 1, 2021Updated 5 years ago