yinxc / structural-information-minimisationLinks
Code of structural entropy minimisation for TAD identification of Hic matrix
☆13Updated 5 years ago
Alternatives and similar repositories for structural-information-minimisation
Users that are interested in structural-information-minimisation are comparing it to the libraries listed below
Sorting:
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 3 years ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 10 months ago
- ☆31Updated 5 years ago
- ☆67Updated 2 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- ☆48Updated 6 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆90Updated 5 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆80Updated 9 months ago
- Accurate and robust imputation of scRNA-seq data☆96Updated 5 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- Deep Embedding for Single-cell Clustering☆87Updated last year
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆50Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆88Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 4 months ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Updated 2 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆21Updated 6 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆21Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- scDeepCluster for Single Cell RNA-seq data☆102Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago