LieberInstitute / spatialDLPFCLinks
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
☆24Updated 3 weeks ago
Alternatives and similar repositories for spatialDLPFC
Users that are interested in spatialDLPFC are comparing it to the libraries listed below
Sorting:
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆21Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆20Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- ☆41Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- ☆19Updated 2 years ago
- ☆32Updated 9 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- ☆36Updated last month
- ☆49Updated 4 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Accurate and fast cell marker gene identification with COSG☆62Updated 2 years ago
- Methods for decontamination of single cell data☆52Updated 9 months ago
- ☆48Updated last month
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆104Updated 6 months ago