LieberInstitute / spatialDLPFC
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
☆16Updated 3 months ago
Related projects: ⓘ
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆70Updated 2 weeks ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆24Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆55Updated last year
- ☆13Updated this week
- Unsupervised Inference of Developmental Directions for Single Cells☆20Updated 8 months ago
- Bayesian Analytics for Spatial Segmentation☆19Updated last year
- ☆16Updated 10 months ago
- Construct Tumor Transition Zone Microenvironment☆31Updated 3 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆12Updated last year
- ☆14Updated 6 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆11Updated last year
- Single Cell Analysis Operations☆12Updated 6 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- Spatial transcriptomics of heart tissue☆16Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆15Updated 2 years ago
- ☆17Updated 5 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆33Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆20Updated last year
- R package for pathway analysis in scRNA-seq data☆57Updated last month
- ☆35Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆23Updated 3 months ago
- ☆12Updated last year
- ☆26Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆12Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆37Updated last year
- ☆11Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆30Updated 3 months ago
- ☆17Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆62Updated 3 months ago