dsarov / SPANDxLinks
SPANDx - Comparative genomics for next-generation haploid sequence data
☆22Updated 2 months ago
Alternatives and similar repositories for SPANDx
Users that are interested in SPANDx are comparing it to the libraries listed below
Sorting:
- ☆37Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆28Updated last month
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- k-mer learning materials☆74Updated 6 months ago
- Gene-flank analysis tool☆29Updated 8 months ago
- ☆53Updated 4 years ago
- Comprehensive resistance detection from WGS data☆19Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 5 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- ☆26Updated 5 years ago
- ☆32Updated 4 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- Genome-Genome circle synteny☆25Updated last year
- HyPhy standalone analyses☆46Updated 2 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago