dsarov / SPANDxLinks
SPANDx - Comparative genomics for next-generation haploid sequence data
☆22Updated 2 months ago
Alternatives and similar repositories for SPANDx
Users that are interested in SPANDx are comparing it to the libraries listed below
Sorting:
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 8 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆37Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 3 weeks ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- Comprehensive resistance detection from WGS data☆19Updated 3 months ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆30Updated last month
- ☆26Updated 6 years ago
- orthology assignment using phylogenetic and network analyses☆51Updated last month
- Split Kmer Analysis☆66Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- ☆53Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Gene-flank analysis tool☆34Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- ☆29Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆41Updated 4 months ago