mjsull / HapFlowLinks
Visualise interstrain recombination from environmental samples.
☆26Updated 6 years ago
Alternatives and similar repositories for HapFlow
Users that are interested in HapFlow are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Bring Your Own Bioinformatics☆27Updated 9 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- reference free variant assembly☆33Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Interactive Visual Analysis of differential gene expression test results☆22Updated 8 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Quality Control of Next Generation Sequencing Data☆20Updated last week
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Nanopore desc☆18Updated 8 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- ☆18Updated 9 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago