mjsull / HapFlow
Visualise interstrain recombination from environmental samples.
☆26Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for HapFlow
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- reference free variant assembly☆32Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- ☆19Updated 7 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated 2 weeks ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Genomic plot in trellis layout☆39Updated 8 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- What's The Function of these genes?☆23Updated 7 years ago
- Talk to the NCBI EUtils☆20Updated 4 years ago
- RNAsik - more than just a pipeline☆13Updated 9 months ago
- Guide to transcriptome assembly & analysis☆21Updated 7 years ago