Visualise interstrain recombination from environmental samples.
☆26Apr 18, 2019Updated 6 years ago
Alternatives and similar repositories for HapFlow
Users that are interested in HapFlow are comparing it to the libraries listed below
Sorting:
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 9 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆65Sep 30, 2022Updated 3 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Align sequences and then parse features.☆17Oct 24, 2025Updated 4 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Distributed and cloud computing framework for vg☆23Jan 6, 2026Updated last month
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆105Oct 29, 2022Updated 3 years ago
- ☆18May 19, 2022Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Updated this week
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- The Zika bioinformatics pipeline☆36Mar 29, 2020Updated 5 years ago
- ☆36Apr 17, 2025Updated 10 months ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 3 years ago
- ☆15May 22, 2025Updated 9 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Python Programming for Biologists☆12Dec 3, 2025Updated 2 months ago
- ☆10Feb 3, 2022Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 weeks ago
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- ☆10Aug 29, 2012Updated 13 years ago