AMRverse / AMRrulesLinks
Interpretative standards for AMR genotypes
☆26Updated last week
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below
Sorting:
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆23Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- Intra-species bacterial contamination detection☆25Updated this week
- Recombination-free trees☆63Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Order and orientation of complete bacterial genomes☆29Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- REcombination BARcode detector.☆16Updated last year
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- ☆13Updated 8 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last month
- ☆25Updated last year
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Discover and annotate the virome☆58Updated last week
- Influenza data pipeline to automate genotyping assignment☆39Updated 3 months ago