AMRverse / AMRrulesLinks
Interpretative standards for AMR genotypes
☆25Updated last week
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below
Sorting:
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bacterial GWAS analysis☆45Updated 3 months ago
- Recombination-free trees☆60Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- Metagenomic Analysis in Real Time☆28Updated this week
- Resolving Species Level Classification Using Emu☆14Updated last year
- ☆13Updated 8 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated 3 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago