Interpretative standards for AMR genotypes
☆29Mar 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for AMRrules
Users that are interested in AMRrules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimic…☆15Mar 31, 2026Updated last week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 4 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- This is the webpage of the ESGEM-AMR Working Group☆16Mar 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Organism-specific interpretation of AMR genotypes☆16Mar 17, 2026Updated 3 weeks ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated last month
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Evaluating Nanopore-based bacterial variant calling☆22Jul 23, 2025Updated 8 months ago
- SeqSero2☆40Oct 1, 2025Updated 6 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated last week
- ☆30Apr 3, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated last month
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- ☆10Jun 9, 2025Updated 10 months ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 6 months ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- Bifrost graph gene caller.☆98Mar 29, 2026Updated last week
- ☆30Mar 6, 2025Updated last year
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Feb 27, 2026Updated last month
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated last month
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated last week
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆176Feb 26, 2026Updated last month
- Follow up to Grace Blackwell's 661k dataset, for 2023☆138Mar 26, 2026Updated 2 weeks ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year