BeatsonLab-MicrobialGenomics / micropipeLinks
A pipeline for high-quality bacterial genome construction using ONT sequencing
☆39Updated 3 years ago
Alternatives and similar repositories for micropipe
Users that are interested in micropipe are comparing it to the libraries listed below
Sorting:
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- Bacterial GWAS analysis☆43Updated 2 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 11 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 6 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated this week
- Discover and annotate the virome☆53Updated last week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 6 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago