BeatsonLab-MicrobialGenomics / micropipeLinks
A pipeline for high-quality bacterial genome construction using ONT sequencing
☆39Updated 3 years ago
Alternatives and similar repositories for micropipe
Users that are interested in micropipe are comparing it to the libraries listed below
Sorting:
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Discover and annotate the virome☆54Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- Bacterial GWAS analysis☆46Updated last month
- Strain Resolution ON Graphs☆49Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- MAG Circularization Method☆32Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 4 years ago
- ☆45Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 11 months ago
- strain-level analysis tools☆39Updated last year
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago