katholt / plotTreeLinks
☆67Updated 9 years ago
Alternatives and similar repositories for plotTree
Users that are interested in plotTree are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Creating plasmid maps inside ggplot.☆88Updated 3 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆25Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Reconstruction of transmission trees using genomic data☆69Updated 2 years ago
- rhierbaps: R implementation of hierBAPS☆36Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- functions to analyse sanger sequencing reads in R☆104Updated last month
- Simple R utilities for working with HMMER☆19Updated last year
- The MG-RAST Backend -- the API server☆46Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year