katholt / plotTree

Related projects ⓘ

Alternatives and complementary repositories for plotTree

• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆70Updated 11 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 7 months ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated last month
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆88Updated last year
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 7 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆29Updated last year
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 6 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆69Updated 2 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆30Updated 8 years ago
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 6 years ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆45Updated 7 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated 2 years ago
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆40Updated 6 months ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆23Updated 2 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆97Updated 7 months ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆31Updated 4 years ago
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆31Updated 3 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆67Updated 8 months ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆84Updated last month
• victoriapascal / gutsmash
  gutSMASH
  ☆52Updated last month
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆34Updated 7 months ago
• rdpstaff / classifier
  RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
  ☆56Updated last year
• SegataLab / metamlst
  MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
  ☆12Updated last year