☆68Jul 8, 2016Updated 10 years ago
Alternatives and similar repositories for plotTree
Users that are interested in plotTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VIGOR4☆22Aug 15, 2025Updated 11 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Jun 9, 2026Updated last month
- Mutual nearest neighbor graphs and data visualization for genomic population networks☆17Feb 6, 2022Updated 4 years ago
- ☆38Apr 14, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- De novo VIral Genome Annotator☆24Jan 11, 2026Updated 6 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- ☆16Jun 26, 2013Updated 13 years ago
- The MLST pipeline developed by the PathOGiST research group☆38Nov 29, 2023Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 5 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- viral-ngs: command line tools and wrappers for processing raw viral genomic data☆197Jul 8, 2026Updated last week
- BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.☆52Jul 1, 2026Updated 2 weeks ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated last month
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Jul 20, 2018Updated 8 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆13Jan 6, 2023Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆86Mar 2, 2026Updated 4 months ago
- Visualization tool for genetic reassortment☆21Apr 29, 2026Updated 2 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 7 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆214Aug 21, 2024Updated last year
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago