neherlab / pan-genome-analysisLinks
Processing pipeline for pan-genome visulization and exploration
☆139Updated last year
Alternatives and similar repositories for pan-genome-analysis
Users that are interested in pan-genome-analysis are comparing it to the libraries listed below
Sorting:
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆145Updated last month
- Pan-genome wide association studies☆198Updated last year
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- snipit: summarise snps relative to your reference sequence☆159Updated 3 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆188Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- Nanopore data assembler☆156Updated 3 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆212Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- An updated pipeline for pangenome investigation☆299Updated 3 months ago
- Convert various sequence formats to FASTA☆135Updated 2 years ago
- Rapid comparison and dereplication of genomes☆294Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆211Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆226Updated 2 years ago
- ☆125Updated this week
- Pipeline for metabolic annotation of microbial genomes☆147Updated 2 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆209Updated 2 weeks ago
- A tool to circularize genome assemblies☆242Updated last year
- Any Way to Show Multi genomic Synteny☆189Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- ☆194Updated last month