Processing pipeline for pan-genome visulization and exploration
☆145Oct 9, 2023Updated 2 years ago
Alternatives and similar repositories for pan-genome-analysis
Users that are interested in pan-genome-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated 11 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 6 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆128Feb 13, 2026Updated 3 months ago
- Pan-genome wide association studies☆218May 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- A tool to circularize genome assemblies☆256Apr 6, 2024Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123May 14, 2026Updated 2 weeks ago
- Rapid haploid variant calling and core genome alignment☆585Dec 12, 2025Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An automated assembly pipeline for microbial genomes☆19May 18, 2026Updated last week
- Fast genome-wide functional annotation through orthology assignment☆737May 22, 2026Updated last week
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 10 months ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated 2 weeks ago
- ☆16Jan 10, 2023Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆360May 13, 2026Updated 2 weeks ago
- NCBI Prokaryotic Genome Annotation Pipeline☆378Apr 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chromosome-level scaffolding using multiple references☆167Sep 8, 2024Updated last year
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆107Feb 6, 2025Updated last year
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated last year
- IslandPath standalone software☆37Nov 7, 2023Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Build a partitioned pangenome graph from microbial genomes☆302Updated this week
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆461Dec 16, 2025Updated 5 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Feb 12, 2016Updated 10 years ago