Processing pipeline for pan-genome visulization and exploration
☆146Oct 9, 2023Updated 2 years ago
Alternatives and similar repositories for pan-genome-analysis
Users that are interested in pan-genome-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated last year
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 9 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆129Feb 13, 2026Updated 6 months ago
- Pan-genome wide association studies☆223May 29, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 6 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Updated this week
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆127Jun 2, 2026Updated 2 months ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast genome-wide functional annotation through orthology assignment☆763Updated this week
- An automated assembly pipeline for microbial genomes☆19Jun 9, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- ☆16Jan 10, 2023Updated 3 years ago
- Rapid haploid variant calling and core genome alignment☆595Dec 12, 2025Updated 8 months ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆370Jul 2, 2026Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆386Jul 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆115Apr 22, 2025Updated last year
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆108Feb 6, 2025Updated last year
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆308Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Eukaryotic Genome Annotation Pipeline☆398Updated this week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63May 5, 2026Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆650Jul 29, 2026Updated 2 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆476Dec 16, 2025Updated 8 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago