Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.
☆19Jul 20, 2018Updated 7 years ago
Alternatives and similar repositories for core-genome-alignment
Users that are interested in core-genome-alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Apr 11, 2018Updated 8 years ago
- An automated assembly pipeline for microbial genomes☆19May 18, 2026Updated last week
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 4 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Apr 30, 2026Updated 3 weeks ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- ☆53May 11, 2021Updated 5 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- Pan-genome wide association studies☆218May 29, 2024Updated last year
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- The PomBase community curation tool☆19May 13, 2026Updated last week
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 10 months ago
- IslandPath standalone software☆37Nov 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 8 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 8 months ago
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated 11 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- Feature Frequency Profile(FFP) two core programs☆13Apr 3, 2026Updated last month
- Collection of scripts for bacterial genomics☆49Dec 6, 2019Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Short Read Sequence Typing for Bacterial Pathogens☆149Jun 20, 2021Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- ☆20Feb 13, 2016Updated 10 years ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated last month
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago