GUI/CommandLine Tool Box for biologistists to utilize NGS data.
☆1,040Apr 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for TBtools-II
Users that are interested in TBtools-II are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library to facilitate genome assembly, annotation, and comparative genomics☆899Apr 2, 2026Updated 2 weeks ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆172Feb 16, 2026Updated 2 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆282Oct 4, 2025Updated 6 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆163Nov 4, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Phylogenetic orthology inference for comparative genomics☆849Jul 15, 2025Updated 9 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,539Updated this week
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- Extensive de-novo TE Annotator☆439Apr 5, 2026Updated 2 weeks ago
- A universal enrichment tool for interpreting omics data☆1,196Apr 12, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,324Apr 8, 2026Updated last week
- Fast genome-wide functional annotation through orthology assignment☆722Mar 24, 2026Updated 3 weeks ago
- Mummer alignment tool☆554Feb 4, 2025Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆888Feb 7, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automatically exported from code.google.com/p/cdhit☆725Oct 11, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆766Updated this week
- Visualization and annotation of phylogenetic trees☆926Apr 9, 2026Updated last week
- Synteny and Rearrangement Identifier☆462Mar 17, 2026Updated last month
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆335Jul 7, 2023Updated 2 years ago
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆332Dec 21, 2018Updated 7 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆213Jan 17, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆456Apr 12, 2026Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆473Apr 10, 2026Updated last week
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆671Apr 3, 2026Updated 2 weeks ago
- Genome annotation with AUGUSTUS☆330Aug 15, 2025Updated 8 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆205Aug 15, 2024Updated last year
- A shiny app for TBtools data plot☆29Aug 15, 2016Updated 9 years ago
- Fast and accurately polish the genome generated by long reads.☆242Jan 9, 2025Updated last year
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆378Feb 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- iTAK☆49Apr 8, 2026Updated last week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆234Sep 6, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆243Mar 27, 2026Updated 3 weeks ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆434Mar 28, 2024Updated 2 years ago