GUI/CommandLine Tool Box for biologistists to utilize NGS data.
☆1,031Jan 29, 2026Updated last month
Alternatives and similar repositories for TBtools-II
Users that are interested in TBtools-II are comparing it to the libraries listed below
Sorting:
- Python library to facilitate genome assembly, annotation, and comparative genomics☆890Updated this week
- Phylogenetic orthology inference for comparative genomics☆839Jul 15, 2025Updated 7 months ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆167Feb 16, 2026Updated 2 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆159Nov 4, 2025Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆277Oct 4, 2025Updated 5 months ago
- A universal enrichment tool for interpreting omics data☆1,173Updated this week
- Extensive de-novo TE Annotator☆430Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,520Feb 27, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,297Jan 22, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆398May 10, 2024Updated last year
- Fast genome-wide functional annotation through orthology assignment☆704Jun 18, 2025Updated 8 months ago
- Mummer alignment tool☆550Feb 4, 2025Updated last year
- Automatically exported from code.google.com/p/cdhit☆720Oct 11, 2022Updated 3 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆883Feb 7, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆743Mar 18, 2025Updated 11 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆329Jul 7, 2023Updated 2 years ago
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆449Oct 20, 2025Updated 4 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆462Dec 26, 2024Updated last year
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆330Dec 21, 2018Updated 7 years ago
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Oct 20, 2024Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆658Feb 24, 2026Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆240Jun 16, 2025Updated 8 months ago
- Genome annotation with AUGUSTUS☆328Aug 15, 2025Updated 6 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆563Jan 13, 2026Updated last month
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- 二代测序数据分析☆376Dec 6, 2023Updated 2 years ago
- Accurate Species TRee ALgorithm☆273Apr 1, 2024Updated last year
- iTAK☆48May 22, 2024Updated last year
- ☆296Sep 28, 2019Updated 6 years ago
- PASA software☆197Feb 12, 2025Updated last year
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆371Feb 13, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆559Feb 14, 2024Updated 2 years ago