GUI/CommandLine Tool Box for biologistists to utilize NGS data.
☆1,069May 9, 2026Updated 2 months ago
Alternatives and similar repositories for TBtools-II
Users that are interested in TBtools-II are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library to facilitate genome assembly, annotation, and comparative genomics☆925Jul 20, 2026Updated last week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆293Oct 4, 2025Updated 9 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆218Jun 30, 2026Updated 3 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆167Nov 4, 2025Updated 8 months ago
- Phylogenetic orthology inference for comparative genomics☆865Jul 15, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆175Jul 22, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,583Jul 8, 2026Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆464Jul 16, 2026Updated last week
- A universal enrichment tool for interpreting omics data☆1,217Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,401Jul 10, 2026Updated 2 weeks ago
- Mummer alignment tool☆569Feb 4, 2025Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆896Apr 23, 2026Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆758May 22, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Automatically exported from code.google.com/p/cdhit☆733Oct 11, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆792May 31, 2026Updated last month
- Visualization and annotation of phylogenetic trees☆930Apr 29, 2026Updated 3 months ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆334Dec 21, 2018Updated 7 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆341Jul 7, 2023Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆349Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A shiny app for TBtools data plot☆29Aug 15, 2016Updated 9 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆491Jul 7, 2026Updated 3 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- Genome annotation with AUGUSTUS☆339May 30, 2026Updated last month
- Version 5 of the CAFE phylogenetics software☆174Mar 16, 2026Updated 4 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆209Jul 16, 2026Updated last week
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆390Feb 13, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆581May 18, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆572Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆251May 20, 2026Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆333May 27, 2026Updated 2 months ago