Alternatives and similar repositories for TBtools-II

Users that are interested in TBtools-II are comparing it to the libraries listed below

• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆501Updated 2 months ago
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆473Updated 2 months ago
• jmzeng1314 / GEO
  ☆851Updated 2 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆445Updated 8 years ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆797Updated 2 months ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆373Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆658Updated 3 months ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆292Updated 2 years ago
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆341Updated 2 years ago
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,132Updated 5 months ago
• jmzeng1314 / 5years
  ☆248Updated 5 years ago
• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆321Updated 3 weeks ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆328Updated 6 years ago
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆357Updated 5 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,043Updated 3 years ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆524Updated last month
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆543Updated 2 months ago
• tseemann / prokka
  Rapid prokaryotic genome annotation
  ☆934Updated last year
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,498Updated 4 months ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆936Updated 2 years ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,109Updated 2 weeks ago
• OpenGene / fastp
  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
  ☆2,189Updated 3 weeks ago
• menghaowei / ngs_learning
  生物信息学交流资料
  ☆260Updated 5 years ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆858Updated last month
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆872Updated 7 months ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆825Updated last year
• hbctraining / DGE_workshop
  ☆400Updated 3 years ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆537Updated last week
• kblin / ncbi-genome-download
  Scripts to download genomes from the NCBI FTP servers
  ☆1,034Updated 2 months ago
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆827Updated last month