GUI/CommandLine Tool Box for biologistists to utilize NGS data.
☆1,074Aug 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for TBtools-II
Users that are interested in TBtools-II are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library to facilitate genome assembly, annotation, and comparative genomics☆926Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆296Oct 4, 2025Updated 10 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆218Jun 30, 2026Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆170Nov 4, 2025Updated 9 months ago
- Phylogenetic orthology inference for comparative genomics☆870Jul 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆177Jul 22, 2026Updated 3 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,589Jul 8, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆467Jul 16, 2026Updated last month
- A universal enrichment tool for interpreting omics data☆1,225Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,412Jul 30, 2026Updated 2 weeks ago
- Mummer alignment tool☆571Feb 4, 2025Updated last year
- Trinity RNA-Seq de novo transcriptome assembly☆897Apr 23, 2026Updated 3 months ago
- Fast genome-wide functional annotation through orthology assignment☆763Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatically exported from code.google.com/p/cdhit☆731Oct 11, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆803May 31, 2026Updated 2 months ago
- Visualization and annotation of phylogenetic trees☆930Apr 29, 2026Updated 3 months ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆334Dec 21, 2018Updated 7 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆341Jul 7, 2023Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆353Jul 27, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A shiny app for TBtools data plot☆29Aug 15, 2016Updated 10 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆494Jul 7, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆700Updated this week
- Genome annotation with AUGUSTUS☆338May 30, 2026Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆177Mar 16, 2026Updated 5 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆210Jul 16, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆244Jan 9, 2025Updated last year
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆394Feb 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆583May 18, 2026Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆575Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆252May 20, 2026Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆444Mar 28, 2024Updated 2 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆336May 27, 2026Updated 2 months ago