R package for Bayesian genomic analyses of hybrid zones, including Bayesian genomic clines
☆10Apr 25, 2025Updated last year
Alternatives and similar repositories for bgc-hm
Users that are interested in bgc-hm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software package for estimating fine-scale recombination rate.☆20Jun 8, 2021Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆40Dec 28, 2021Updated 4 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- ☆14Feb 20, 2026Updated 8 months ago
- Topology weighting from unphased genotypes of any ploidy☆30Aug 13, 2026Updated 2 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated last year
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for analysis of hybrids and hybrid zones☆22Sep 23, 2026Updated last month
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Oct 21, 2026Updated 3 weeks ago
- Estimating Effective Migration Surfaces☆112Updated this week
- Toolkit for preparing genomes for submission to NCBI☆30Sep 6, 2021Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- A Landscape Genomic Analysis Toolkit in R☆23Aug 28, 2026Updated 2 months ago
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- Hybridization detection using phylogenetic invariants☆54Oct 29, 2024Updated 2 years ago
- rdiversity - An R package for measuring similarity-sensitive diversity☆11Jul 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆47Sep 8, 2026Updated 2 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 11 years ago
- Code accompanying to "COVID-19 transmission in supermarkets using agent-based modelling"☆11May 3, 2021Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Package for writing multiple sequence alignments of pseudo-references from a VCF file with a reference genome☆10Jun 12, 2023Updated 3 years ago
- ☆37Aug 18, 2024Updated 2 years ago
- ☆11Feb 12, 2022Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆34Sep 30, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Processing protein-coding DNA sequences in frame☆11Updated this week
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆79Apr 9, 2026Updated 7 months ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Dec 7, 2024Updated last year
- Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis☆15Sep 21, 2026Updated last month
- ☆34Jan 5, 2023Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆38Apr 17, 2026Updated 6 months ago
Are these results useful?