jhhung / PEAT
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
☆22Updated 4 years ago
Alternatives and similar repositories for PEAT:
Users that are interested in PEAT are comparing it to the libraries listed below
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆12Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago