jhhung / PEATLinks
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
☆22Updated 4 years ago
Alternatives and similar repositories for PEAT
Users that are interested in PEAT are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- sort genomic data☆36Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month