An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
☆22Jan 19, 2021Updated 5 years ago
Alternatives and similar repositories for PEAT
Users that are interested in PEAT are comparing it to the libraries listed below
Sorting:
- A configurable de novo assembly pipeline☆28Jun 29, 2016Updated 9 years ago
- ☆15Mar 7, 2016Updated 9 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 9 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 6 months ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Apr 29, 2025Updated 10 months ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 10 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆79Sep 1, 2020Updated 5 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- ☆15Mar 6, 2018Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Jun 19, 2018Updated 7 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago