CollasLab / eddLinks
Enriched Domain Detector for ChIP-seq data
☆16Updated 2 years ago
Alternatives and similar repositories for edd
Users that are interested in edd are comparing it to the libraries listed below
Sorting:
- Chromatin segmentation in R☆19Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated last month
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- Genomic Association Tester☆31Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Q ChIP-seq peak caller☆18Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Updated 6 years ago