akdemirlab / HiCPlotterLinks
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆189Updated 5 years ago
Alternatives and similar repositories for HiCPlotter
Users that are interested in HiCPlotter are comparing it to the libraries listed below
Sorting:
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆255Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆262Updated 7 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated 2 weeks ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- ☆155Updated 2 years ago
- IDR☆172Updated 7 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆152Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- ☆151Updated 3 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆167Updated 4 months ago
- VarDict☆198Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- ☆138Updated 6 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆205Updated 7 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- ASCAT R package☆188Updated 6 months ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆118Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆241Updated 2 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆237Updated last week
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago