akdemirlab / HiCPlotterLinks
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
☆187Updated 5 years ago
Alternatives and similar repositories for HiCPlotter
Users that are interested in HiCPlotter are comparing it to the libraries listed below
Sorting:
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆254Updated 5 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆143Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆251Updated 3 weeks ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- VarDict☆198Updated last year
- ☆152Updated 2 years ago
- IDR☆172Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆276Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated this week
- ☆147Updated last month
- Structural variation and indel detection by local assembly☆247Updated last week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆221Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆231Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆270Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆214Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated last year