shwhalen / targetfinderLinks
☆84Updated 4 years ago
Alternatives and similar repositories for targetfinder
Users that are interested in targetfinder are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- ☆49Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- Tools for working with BUS files☆102Updated 4 months ago
- ☆89Updated 3 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆34Updated 9 months ago
- HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network☆102Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- ☆74Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 3 months ago
- bradner lab computation pipeline scripts☆54Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆86Updated 4 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- IDR☆30Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last week
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆108Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago