shwhalen / targetfinder
☆83Updated 4 years ago
Alternatives and similar repositories for targetfinder:
Users that are interested in targetfinder are comparing it to the libraries listed below
- A tool for bigWig files.☆120Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆50Updated last year
- ☆72Updated 3 years ago
- ☆84Updated 3 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Tools for working with BUS files☆95Updated 5 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 4 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 5 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆40Updated 5 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- MOODS: Motif Occurrence Detection Suite☆97Updated last year
- ☆53Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆108Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- ☆76Updated 2 years ago
- ☆116Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- ☆47Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆47Updated 2 years ago
- ☆61Updated 4 years ago