shwhalen / targetfinder
☆84Updated 4 years ago
Alternatives and similar repositories for targetfinder:
Users that are interested in targetfinder are comparing it to the libraries listed below
- A tool for bigWig files.☆119Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- ☆84Updated 4 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- ☆72Updated 3 years ago
- ☆47Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- ☆50Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆69Updated 3 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- Extract data quickly from Juicebox via straw☆68Updated last month
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- ☆37Updated 2 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 5 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- Tools for working with BUS files☆98Updated last week
- ☆68Updated last year
- IDR☆31Updated 2 years ago
- ☆64Updated last year
- MOODS: Motif Occurrence Detection Suite☆97Updated last year