charite / QLinks
Q ChIP-seq peak caller
☆18Updated last year
Alternatives and similar repositories for Q
Users that are interested in Q are comparing it to the libraries listed below
Sorting:
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆78Updated 11 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Download binary executables and sample data here:☆18Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago