kundajelab / genomediscoLinks
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
☆26Updated 7 years ago
Alternatives and similar repositories for genomedisco
Users that are interested in genomedisco are comparing it to the libraries listed below
Sorting:
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 9 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆37Updated 10 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆23Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago