kundajelab / genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
☆26Updated 6 years ago
Alternatives and similar repositories for genomedisco:
Users that are interested in genomedisco are comparing it to the libraries listed below
- A preprocessing and QC pipeline for HiChIP data☆35Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- IDR☆31Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- ☆12Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- OLD REPOSITORY - Go to☆32Updated 7 years ago
- ☆18Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Predicting regulatory DNA elements based on epigenomic signatures☆28Updated 8 months ago
- ☆25Updated 9 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year