Single cell typing based on cell ontology
☆54Dec 10, 2023Updated 2 years ago
Alternatives and similar repositories for OnClass
Users that are interested in OnClass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scPretrain: Multi-task self-supervised learning for cell type classification☆24Dec 24, 2021Updated 4 years ago
- ☆10Jul 22, 2020Updated 6 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Code and documentation for the curation of cellxgene datasets☆58Aug 2, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- weighted indexes for clustering evaluation☆15Apr 18, 2020Updated 6 years ago
- CZ CELLxGENE Discover Census☆129Updated this week
- ☆36Jun 4, 2023Updated 3 years ago
- Read fcs files.☆12Nov 13, 2025Updated 8 months ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 6 years ago
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 6 years ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆132Dec 21, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆17Oct 4, 2024Updated last year
- ☆11Jul 8, 2024Updated 2 years ago
- ☆310Nov 10, 2024Updated last year
- Single-Cell Clustering Assessment Framework☆111Oct 27, 2023Updated 2 years ago
- Scripts, data files and ontologies for the FLOPO project☆11Aug 1, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Sep 5, 2018Updated 7 years ago
- An ontology of cell types☆207Jul 22, 2026Updated 2 weeks ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Updated this week
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 2 months ago
- ☆13Nov 13, 2018Updated 7 years ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆341Updated this week
- Tool to create images and configuration files for Minerva-Story☆16Jul 20, 2026Updated 3 weeks ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).☆29Nov 22, 2023Updated 2 years ago