Alternatives and similar repositories for OnClass

Users that are interested in OnClass are comparing it to the libraries listed below

• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated 2 years ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆117Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆46Updated 2 years ago
• suinleelab / contrastiveVI
  ☆60Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆51Updated 11 months ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆52Updated last week
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated last year
• zcang / SpaOTsc
  ☆47Updated 6 months ago
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆37Updated 3 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 7 months ago
• tanlabcode / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆44Updated 3 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 3 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆37Updated 5 years ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 3 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated 2 weeks ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆65Updated 5 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆22Updated 4 years ago
• LungCellAtlas / HLCA
  ☆66Updated 2 years ago
• theislab / scTab
  ☆62Updated last year
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆19Updated last year
• theislab / AutoGeneS
  ☆61Updated 4 years ago