Examples of single-cell genomic analysis accelerated with RAPIDS
☆346Aug 27, 2025Updated 9 months ago
Alternatives and similar repositories for rapids-single-cell-examples
Users that are interested in rapids-single-cell-examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆372Updated this week
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Deep learning based processing of Atac-seq data☆135Feb 16, 2023Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,629Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,464May 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆498Apr 23, 2026Updated last month
- NicheNet: predict active ligand-target links between interacting cells☆650Nov 12, 2025Updated 6 months ago
- muon is a multimodal omics Python framework☆268May 8, 2026Updated 2 weeks ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,566Dec 11, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆650May 12, 2026Updated 2 weeks ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Jul 8, 2023Updated 2 years ago
- Single cell perturbation prediction☆343Dec 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆67May 17, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆251May 20, 2026Updated last week
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆251May 19, 2026Updated last week
- Spatial Single Cell Analysis in Python☆571May 20, 2026Updated last week
- SDK for GPU accelerated genome assembly and analysis☆300May 3, 2024Updated 2 years ago
- Benchmarking analysis of data integration tools☆415Apr 27, 2026Updated last month
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,739May 2, 2026Updated 3 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆397May 6, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collections of library structure and sequence of popular single cell genomic methods☆501Apr 16, 2026Updated last month
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- Scaling Single Cell Analysis to Millions of Cells☆285May 12, 2026Updated 2 weeks ago
- ☆362Dec 9, 2021Updated 4 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Nov 30, 2020Updated 5 years ago
- A tool for semi-automatic cell type classification☆483Updated this week
- Formalizing and benchmarking open problems in single-cell genomics☆431May 7, 2026Updated 3 weeks ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆607Jun 26, 2025Updated 11 months ago
- Convert between AnnData and SingleCellExperiment☆150Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- Single-cell epigenomics analysis tools☆319May 19, 2026Updated last week
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Apr 4, 2026Updated last month
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Aug 20, 2025Updated 9 months ago