NVIDIA-Genomics-Research / rapids-single-cell-examplesLinks
Examples of single-cell genomic analysis accelerated with RAPIDS
☆344Updated 3 weeks ago
Alternatives and similar repositories for rapids-single-cell-examples
Users that are interested in rapids-single-cell-examples are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆381Updated last month
- muon is a multimodal omics Python framework☆247Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆473Updated 2 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆240Updated this week
- Scanpy Tutorials.☆220Updated this week
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆296Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆369Updated 3 weeks ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆237Updated last week
- Benchmarking analysis of data integration tools☆378Updated 3 weeks ago
- CellRank: dynamics from multi-view single-cell data☆393Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆395Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 6 months ago
- A tool for semi-automatic cell type classification☆405Updated this week
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- T/B cell receptor sequencing analysis notes☆263Updated 9 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆371Updated 11 months ago
- This is the alpha version of the CellOracle package☆379Updated 8 months ago
- Panoramic stitching of single cell data☆290Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆464Updated 6 months ago
- 10x Genomics Single Cell Analysis☆428Updated 7 months ago
- Single cell perturbation prediction☆315Updated 9 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆213Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆354Updated last month
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆264Updated 7 months ago
- Spatial Single Cell Analysis in Python☆512Updated this week
- tools and notes for spatial omics☆314Updated 6 months ago
- Python package to perform enrichment analysis from omics data.☆223Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆538Updated 2 months ago
- Single cell RNA sequencing analysis course☆221Updated last week