NVIDIA-Genomics-Research / rapids-single-cell-examplesLinks
Examples of single-cell genomic analysis accelerated with RAPIDS
☆345Updated last month
Alternatives and similar repositories for rapids-single-cell-examples
Users that are interested in rapids-single-cell-examples are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆383Updated last week
- muon is a multimodal omics Python framework☆248Updated this week
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆246Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆239Updated this week
- Scanpy Tutorials.☆225Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆297Updated 2 months ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆472Updated last month
- This is the alpha version of the CellOracle package☆383Updated 9 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆375Updated last month
- Benchmarking analysis of data integration tools☆384Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆265Updated 10 months ago
- A tool for semi-automatic cell type classification☆412Updated this week
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- CellRank: dynamics from multi-view single-cell data☆397Updated last month
- 10x Genomics Single Cell Analysis☆432Updated 8 months ago
- A package to help convert different single-cell data formats to each other☆442Updated last year
- Panoramic stitching of single cell data☆289Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆397Updated last month
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆229Updated last week
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆373Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆215Updated 2 years ago
- tools and notes for spatial omics☆315Updated 7 months ago
- Single-cell perturbation analysis☆203Updated last week
- RNA Velocity generalized through dynamical modeling☆467Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆381Updated this week
- ☆359Updated 3 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆166Updated 2 weeks ago