NVIDIA-Genomics-Research / rapids-single-cell-examplesLinks
Examples of single-cell genomic analysis accelerated with RAPIDS
☆346Updated 4 months ago
Alternatives and similar repositories for rapids-single-cell-examples
Users that are interested in rapids-single-cell-examples are comparing it to the libraries listed below
Sorting:
- Reference mapping for single-cell genomics☆396Updated 3 weeks ago
- muon is a multimodal omics Python framework☆257Updated 2 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆284Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆242Updated this week
- Scanpy Tutorials.☆230Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆477Updated last week
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- Benchmarking analysis of data integration tools☆397Updated 3 months ago
- A tool for semi-automatic cell type classification☆440Updated this week
- CellRank: dynamics from multi-view single-cell data☆411Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆303Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆270Updated last year
- Python package to perform enrichment analysis from omics data.☆245Updated this week
- Single-cell perturbation analysis☆224Updated last week
- Panoramic stitching of single cell data☆293Updated 5 months ago
- Single cell perturbation prediction☆328Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆234Updated 2 months ago
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆245Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆414Updated last month
- This is the alpha version of the CellOracle package☆404Updated 11 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆335Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆395Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆253Updated last week
- tools and notes for spatial omics☆333Updated 10 months ago
- 10x Genomics Single Cell Analysis☆438Updated 2 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 2 months ago
- Spatial Single Cell Analysis in Python☆544Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆368Updated 4 months ago
- Kipoi's model zoo API☆240Updated last week
- RNA Velocity generalized through dynamical modeling☆481Updated last month