Examples of single-cell genomic analysis accelerated with RAPIDS
☆344Aug 27, 2025Updated 11 months ago
Alternatives and similar repositories for rapids-single-cell-examples
Users that are interested in rapids-single-cell-examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆391Updated this week
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last month
- Deep learning based processing of Atac-seq data☆137Feb 16, 2023Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,675Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,542Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellRank: dynamics from multi-view single-cell data☆455Aug 3, 2026Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆507Jul 26, 2026Updated 3 weeks ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,586Dec 11, 2022Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆673Jun 1, 2026Updated 2 months ago
- muon is a multimodal omics Python framework☆279Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Single cell perturbation prediction☆352Dec 5, 2024Updated last year
- ☆67May 17, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Methods for detecting doublets in single-cell sequencing data☆260Jul 7, 2026Updated last month
- Scaling Single Cell Analysis to Millions of Cells☆302Jul 13, 2026Updated last month
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆263Updated this week
- Spatial Single Cell Analysis in Python☆588Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆128Apr 20, 2026Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆411Updated this week
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,835Aug 1, 2026Updated 2 weeks ago
- SDK for GPU accelerated genome assembly and analysis☆302May 3, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆506Apr 16, 2026Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆185Nov 30, 2020Updated 5 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Panoramic stitching of single cell data☆294Jul 14, 2025Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆436Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- A tool for semi-automatic cell type classification☆501May 22, 2026Updated 2 months ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆633Jun 26, 2025Updated last year
- Single-cell epigenomics analysis tools☆324Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Convert between AnnData and SingleCellExperiment☆151Aug 11, 2026Updated last week
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated 2 months ago
- Models and datasets for perturbational single-cell omics☆181Aug 19, 2022Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆311Mar 6, 2023Updated 3 years ago