Computes various SV statistics
☆14Oct 12, 2023Updated 2 years ago
Alternatives and similar repositories for svprops
Users that are interested in svprops are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for processing and analyzing structural variants.☆34Sep 8, 2015Updated 10 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- QTG_Finder, a QTL causal gene prioritization tool☆11Nov 9, 2024Updated last year
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Jan 7, 2020Updated 6 years ago
- ☆16Aug 8, 2025Updated 7 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Integrative analysis of structural variations.☆40Dec 20, 2023Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆234Feb 17, 2022Updated 4 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 16, 2026Updated last week
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 9 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Feb 26, 2026Updated 3 weeks ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆54Oct 12, 2023Updated 2 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 6 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 11 years ago
- ☆19Jul 28, 2025Updated 7 months ago
- GBWT-based handle graph☆31Updated this week