dellytools / svpropsLinks
Computes various SV statistics
☆14Updated 2 years ago
Alternatives and similar repositories for svprops
Users that are interested in svprops are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆51Updated 6 years ago
- A transposition caller.☆10Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural variant merging tool☆57Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 7 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- ☆20Updated 9 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- fastx-utils using klib☆20Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- ☆35Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Enabling differential allele-specific analysis☆11Updated 11 months ago