dellytools / svpropsLinks
Computes various SV statistics
☆14Updated 2 years ago
Alternatives and similar repositories for svprops
Users that are interested in svprops are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆51Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Adapters for trimming☆30Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A transposition caller.☆12Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Structural variant merging tool☆57Updated last year
- ☆35Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 8 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Microsatellite instability (MSI) detection for cfDNA samples.