dellytools / svprops
Computes various SV statistics
☆14Updated last year
Alternatives and similar repositories for svprops:
Users that are interested in svprops are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 7 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Structural variant merging tool☆49Updated 5 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆51Updated 5 years ago
- Variant annotation and merging pipeline☆31Updated 3 weeks ago
- ☆21Updated last week
- A transposition caller.☆10Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- ☆33Updated 9 months ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Structural variant caller☆54Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 7 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago