Tools for processing and analyzing structural variants.
☆34Sep 8, 2015Updated 10 years ago
Alternatives and similar repositories for svtools
Users that are interested in svtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆461Oct 11, 2025Updated 6 months ago
- ☆13Jun 21, 2017Updated 8 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 11 months ago
- phenotype-based prioritization of candidate genes for human diseases☆65Jan 25, 2023Updated 3 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A python interface for the CIViC db application☆12Updated this week
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 2 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- ☆15Jul 21, 2022Updated 3 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- ☆39Jul 3, 2025Updated 9 months ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- FusionAnnotator source code☆16Feb 27, 2026Updated last month
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago
- Ancestry and Kinship Tools☆70Nov 16, 2022Updated 3 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- ☆24Jul 29, 2025Updated 8 months ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 3 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Apr 2, 2026Updated last week
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆25Aug 20, 2020Updated 5 years ago
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated last month