ctsa / svtools
Tools for processing and analyzing structural variants.
☆33Updated 9 years ago
Alternatives and similar repositories for svtools:
Users that are interested in svtools are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆39Updated 10 months ago
- ☆46Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- ☆53Updated 2 years ago
- Structural variant merging tool☆49Updated 6 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last month
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆21Updated 3 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- ☆36Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- CN-Learn☆29Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Find and characterise transposable element insertions☆21Updated last year