ctsa / svtoolsLinks
Tools for processing and analyzing structural variants.
☆34Updated 10 years ago
Alternatives and similar repositories for svtools
Users that are interested in svtools are comparing it to the libraries listed below
Sorting:
- QDNAseq package for Bioconductor☆54Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- ☆54Updated 3 years ago
- ☆51Updated 6 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- Structural variant merging tool☆57Updated last year
- ☆44Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆37Updated 6 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 months ago
- BISulfite-seq CUI Toolkit☆26Updated this week
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago